Bioconductor Cloud computing

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softwaredevelopment Job job cloudcomputing genetics

4.2 years ago • updated 3.8 years ago Vincent J. Carey, Jr. 6.7k

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job computational biology cloud computing software engineering Job

5.1 years ago Vincent J. Carey, Jr. 6.7k

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software engineering bioconductor cloud computing Job

6.1 years ago Vincent J. Carey, Jr. 6.7k

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Comment: Merge Replicates vs Mixed Model by abadgerw • 0

Thanks, @gabrielhoffman The data is actually proteomics so it is intensity data which is why I did not use voom but rather ran ebayes wi…

Comment: ANOVA like approach of edgeR by Gordon Smyth 52k

To identify common upregulated or downregulated genes, you would need to test for media condition contrasts for each cell type separately, …

Comment: DESeq2 sizefactors counfounded with biological treatment by Anna • 0

Hi James, Apologies (re: posting in the wrong place). Thank you so much for your response, that was exactly the help I needed. Best, A…

Comment: ANOVA like approach of edgeR by Talip ▴ 10

I am comparing the expression patterns of different tissue cell lines (CellType) under five distinct media conditions (Status). Since the c…

Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 160

It is almost always better to retain the full observed data, if the statistical software is able to model the repeated measures. This is a…

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Answer: ANOVA like approach of edgeR

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